PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0013s0250.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 198aa    MW: 21765.2 Da    PI: 5.3577
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0013s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.5e-184088355
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  SapurV1A.0013s0250.1.p 40 YRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 88
                            9****887.**********843...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.0E-123888IPR001471AP2/ERF domain
SMARTSM003803.1E-3539102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-313997IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-213998IPR016177DNA-binding domain
PROSITE profilePS5103223.673996IPR001471AP2/ERF domain
CDDcd000184.49E-314097No hitNo description
PRINTSPR003671.8E-124051IPR001471AP2/ERF domain
PRINTSPR003671.8E-127898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEQPPYTEDD PISNSPEAAT APAHQNPETP RSSGTRNPAY RGVRKRRWGK WVSEIREPRK  60
KSRIWLGSFP VPEMAAKAYD VAAYCLKGRN AQLNFPDEVD DLPRPSTCTA RDIQAAAAKA  120
AHSVLVPRKK SIEKNSDNSV EGEVAGDDFW GEIELPELLM SNSGCCWNSC GWSTVASDSS  180
TWQQDGEGLP QFMACLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-1540100667ATERF1
2gcc_A4e-1540100667ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559330.0EF155933.1 Populus trichocarpa TINY-like protein (TINYL14) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320204.11e-126AP2 domain-containing transcription factor family protein
SwissprotQ1ECI22e-66ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA9PL831e-126A9PL83_POPTR; AP2 domain-containing transcription factor family protein
STRINGPOPTR_0014s09540.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.19e-67ERF family protein